Simple approach for ranking structure determining residues

نویسندگان

  • Oscar D. Luna-Martínez
  • Abraham Vidal-Limón
  • Miryam I. Villalba-Velázquez
  • Rosalba Sánchez-Alcalá
  • Ramón Garduño-Juárez
  • Vladimir N. Uversky
  • Baltazar Becerril
چکیده

Mutating residues has been a common task in order to study structural properties of the protein of interest. Here, we propose and validate a simple method that allows the identification of structural determinants; i.e., residues essential for preservation of the stability of global structure, regardless of the protein topology. This method evaluates all of the residues in a 3D structure of a given globular protein by ranking them according to their connectivity and movement restrictions without topology constraints. Our results matched up with sequence-based predictors that look up for intrinsically disordered segments, suggesting that protein disorder can also be described with the proposed methodology.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

A Near Optimal Approach in Choosing The Appropriate Physical Machines for Live Virtual Machines Migration in Cloud Computing

Migration of Virtual Machine (VM) is a critical challenge in cloud computing. The process to move VMs or applications from one Physical Machine (PM) to another is known as VM migration. In VM migration several issues should be considered. One of the major issues in VM migration problem is selecting an appropriate PM as a destination for a migrating VM. To face this issue, several approaches are...

متن کامل

Optimized locating of fluting paper plant from agricultural residues using AHP (based on benefit and cost approach)

A suitable location plays an important role in the competitiveness of a plant inthe market and should be selected such that it allows access to strategic advantagescompared with other competitors. The aim of the current study was identificationoptimized location of fluting paper plant from agricultural residues in Mazandaranprovince using the Analytical Hierarchy Process (AHP). After performing...

متن کامل

A new approach for Robot selection in manufacturing using the ellipsoid algorithm

The choice of suitable robots in manufacturing, to improve product quality and to increase productivity, is a complicated decision due to the increase in robot manufacturers and configurations. In this article, a novel approach is proposed to choose among alternatives, differently assessed by decision makers on different criteria, to make the final evaluation for decision-making. The approach i...

متن کامل

Investigating the Structure and Model Formulation of Iran’s Export Market: Case study: Kiwi, Apple and Grapes

One of the important strategies in economic development, is development of non-oil exports. In order to increase non-oil export policy, cognition of domestic products priorities that have the necessary conditions of international markets penetration, it seems to be necessary. In this study, the structure of the global market was studied for three products as apples, grapes and kiwi and Iran’s m...

متن کامل

A Model for Evaluation and Ranking of Human Resources Risks with an Intelligent Neuro-Fuzzy Approach (ANFIS) In National Iranian Gas Company

The present study aimed to design a model of human resources risks assessment and ranking using the neuro-fuzzy approach as one of the methods of artificial intelligence in Iran national Gas Company. Three main steps were taken to achieve this goal: the first step was to identify the evaluation criteria that were achieved by literature reviews and the theoretical foundations of the research bas...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره 4  شماره 

صفحات  -

تاریخ انتشار 2016